(Q48328149)

10 February 2018

title

Model-based prediction of sequence alignment quality (English)

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Mauno Vihinen

series ordinal

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author name string

Virpi Ahola

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Esa Uusipaikka

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language of work or name

English

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publication date

4 August 2008

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published in

Bioinformatics

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volume

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issue

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page(s)

2165-2171

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A statistical score for assessing the quality of multiple sequence alignments

cites work

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN414

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BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations

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A word-oriented approach to alignment validation

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ProbCons: Probabilistic consistency-based multiple sequence alignment

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Structure-based evaluation of sequence comparison and fold recognition alignment accuracy.

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

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Multiple sequence alignment.

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN414

Structural genomics: computational methods for structure analysis

21 January 2018

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Mind the gaps: evidence of bias in estimates of multiple sequence alignments.

21 January 2018

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Consistency of optimal sequence alignments

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Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems

21 January 2018

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Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

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MAFFT version 5: improvement in accuracy of multiple sequence alignment

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21 January 2018

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21 January 2018

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Automatic assessment of alignment quality

21 January 2018

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Recent progress in multiple sequence alignment: a survey

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T-Coffee: A novel method for fast and accurate multiple sequence alignment

21 January 2018

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The accuracy of several multiple sequence alignment programs for proteins

21 January 2018

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MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information

21 January 2018

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PROMALS: towards accurate multiple sequence alignments of distantly related proteins.

21 January 2018

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AL2CO: calculation of positional conservation in a protein sequence alignment.

21 January 2018

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Large-scale comparison of protein sequence alignment algorithms with structure alignments

21 January 2018

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A better lemon squeezer? Maximum-likelihood regression with beta-distributed dependent variables

21 January 2018

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

21 January 2018

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A comprehensive comparison of multiple sequence alignment programs

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN414

Near-optimal sequence alignment

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN414

Motif recognition and alignment for many sequences by comparison of dot-matrices.

21 January 2018

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10.1093/BIOINFORMATICS/BTN414

21 January 2018

Identifiers

DOI

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10 February 2018

journals/bioinformatics/AholaAVU08

DBLP publication ID

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DBLP Dataset 2021-01-02

28 January 2021

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10 February 2018