(Q34978052)

5 August 2017

title

Molecular dynamics flexible fitting: a practical guide to combine cryo-electron microscopy and X-ray crystallography (English)

1 reference

cryogenic electron microscopy

5 August 2017

main subject

X-ray crystallography

0 references

0 references

Elizabeth Villa

0 references

Klaus Schulten

series ordinal

object named as

Klaus Schulten

1 reference

5 August 2017

Eduard Schreiner

1 reference

5 August 2017

Leonardo G Trabuco

1 reference

5 August 2017

Christopher B Harrison

series ordinal

1 reference

5 August 2017

publication date

4 May 2009

1 reference

5 August 2017

1 reference

5 August 2017

1 reference

5 August 2017

1 reference

5 August 2017

page(s)

174-180

1 reference

All-atom empirical potential for molecular modeling and dynamics studies of proteins

5 August 2017

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1 reference

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Exploration of parameters in cryo-EM leading to an improved density map of the E. coli ribosome

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Dynamics of Recognition between tRNA and elongation factor Tu

8 July 2018

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Protein structure fitting and refinement guided by cryo-EM density

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Refinement of protein structures by iterative comparative modeling and CryoEM density fitting

8 July 2018

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Scalable molecular dynamics with NAMD

8 July 2018

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Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM.

8 July 2018

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Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Using situs for flexible and rigid-body fitting of multiresolution single-molecule data

8 July 2018

1 reference

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Domain motions of EF-G bound to the 70S ribosome: insights from a hand-shaking between multi-resolution structures

8 July 2018

1 reference

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8 July 2018

1 reference

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8 July 2018

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8 July 2018

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8 July 2018

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Ligand binding: molecular mechanics calculation of the streptavidin-biotin rupture force

8 July 2018

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8 July 2018

1 reference

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26 October 2018

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26 October 2018

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26 October 2018

1 reference

Crossref

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.005

A short guide for molecular dynamics simulations of RNA systems.

7 January 2021

1 reference

Crossref

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.005

Hydrophilicity of cavities in proteins

7 January 2021

1 reference

Crossref

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.005

Regulation of the Protein-Conducting Channel by a Bound Ribosome

7 January 2021

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19398010

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.YMETH.2009.04.005

1 reference

5 August 2017

1 reference

5 August 2017

1 reference