(Q34834133)

4 August 2017

title

Association between active genes occurs at nuclear speckles and is modulated by chromatin environment (English)

1 reference

4 August 2017

author

Ricardo Pires das Neves

object named as

Ricardo Pires das Neves

0 references

Douglas R Higgs

0 references

Francisco J Iborra

0 references

Jill M Brown

1 reference

4 August 2017

Joanne Green

1 reference

4 August 2017

Helen A C Wallace

1 reference

4 August 2017

Andrew J H Smith

1 reference

4 August 2017

Jim Hughes

1 reference

4 August 2017

Nicki Gray

1 reference

4 August 2017

Steve Taylor

1 reference

4 August 2017

William G Wood

1 reference

4 August 2017

Veronica J Buckle

1 reference

4 August 2017

language of work or name

English

0 references

publication date

1 September 2008

1 reference

4 August 2017

1 reference

inferred from page(s)

published in

Journal of Cell Biology

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4 August 2017

volume

182

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4 August 2017

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4 August 2017

page(s)

1083-1097

1 reference

Maintenance of long-range DNA interactions after inhibition of ongoing RNA polymerase II transcription

4 August 2017

cites work

1 reference

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Allele-specific nuclear positioning of the monoallelically expressed astrocyte marker GFAP

8 July 2018

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Ectopic nuclear reorganisation driven by a Hoxb1 transgene transposed into Hoxd

8 July 2018

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Deletion of the core-H region in mice abolishes the expression of three proximal odorant receptor genes in cis.

8 July 2018

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Sensing X chromosome pairs before X inactivation via a novel X-pairing region of the Xic.

8 July 2018

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Coordinate gene regulation during hematopoiesis is related to genomic organization

8 July 2018

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Genetics and epigenetics of the multifunctional protein CTCF.

8 July 2018

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We gather together: insulators and genome organization

8 July 2018

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Maintenance of imprinting and nuclear architecture in cycling cells

8 July 2018

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Defining early steps in mRNA transport: mutant mRNA in myotonic dystrophy type I is blocked at entry into SC-35 domains

8 July 2018

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Domain-wide regulation of gene expression in the human genome

8 July 2018

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In vivo dynamics of RNA polymerase II transcription.

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Myc dynamically and preferentially relocates to a transcription factory occupied by Igh

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Nuclear organization of the genome and the potential for gene regulation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

High-resolution profiling of histone methylations in the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Long-range DNA contacts: romance in the nucleus?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Silencing by imprinted noncoding RNAs: is transcription the answer?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

The three-dimensional structure of human interphase chromosomes is related to the transcriptome map.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Beyond the sequence: cellular organization of genome function

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Noncoding RNAs and intranuclear positioning in monoallelic gene expression

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

CTCF interacts with and recruits the largest subunit of RNA polymerase II to CTCF target sites genome-wide

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Phosphorylation and functions of the RNA polymerase II CTD

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Interchromosomal interactions and olfactory receptor choice

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Transient homologous chromosome pairing marks the onset of X inactivation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Coregulated human globin genes are frequently in spatial proximity when active

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Common themes and cell type specific variations of higher order chromatin arrangements in the mouse

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

The role of chromatin structure in regulating the expression of clustered genes.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Interchromosomal associations between alternatively expressed loci

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Higher order chromatin architecture in the cell nucleus: on the way from structure to function.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Active genes dynamically colocalize to shared sites of ongoing transcription

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Chromatin architecture of the human genome: gene-rich domains are enriched in open chromatin fibers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Tissue-specific spatial organization of genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

The spatial organization of the genome in mammalian cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

The evolutionary dynamics of eukaryotic gene order

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Mutation of a single CTCF target site within the H19 imprinting control region leads to loss of Igf2 imprinting and complex patterns of de novo methylation upon maternal inheritance.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Repositioning of Muscle-specific Genes Relative to the Periphery of SC-35 Domains during Skeletal Myogenesis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Clustering of multiple specific genes and gene-rich R-bands around SC-35 domains: evidence for local euchromatic neighborhoods

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

A genetic analysis of chromosome territory looping: diverse roles for distal regulatory elements.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Nuclear speckles: a model for nuclear organelles

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Sequential entry of components of the gene expression machinery into daughter nuclei

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Gene density and transcription influence the localization of chromatin outside of chromosome territories detectable by FISH.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Clustering of housekeeping genes provides a unified model of gene order in the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

The human transcriptome map: clustering of highly expressed genes in chromosomal domains

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Tracking COL1A1 RNA in osteogenesis imperfecta. splice-defective transcripts initiate transport from the gene but are retained within the SC35 domain

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nuclei

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

The pattern of replication at a human telomeric region (16p13.3): its relationship to chromosome structure and gene expression

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Mechanisms of developmental control of transcription in the murine alpha- and beta-globin loci

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

The size of sites containing SR proteins in human nuclei. Problems associated with characterizing small structures by immunogold labeling

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

The path of transcripts from extra-nucleolar synthetic sites to nuclear pores: transcripts in transit are concentrated in discrete structures containing SR proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Numbers and organization of RNA polymerases, nascent transcripts, and transcription units in HeLa nuclei.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

The dynamics of a pre-mRNA splicing factor in living cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Quantitative digital analysis of diffuse and concentrated nuclear distributions of nascent transcripts, SC35 and poly(A).

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Control of RNA polymerase II elongation potential by a novel carboxyl-terminal domain kinase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Transient colocalization of X-inactivation centres accompanies the initiation of X inactivation.

8 July 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.200803174

Different populations of RNA polymerase II in living mammalian cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.200803174

Molecular cross-talk between the transcription, translation, and nonsense-mediated decay machineries

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.200803174

Transcriptional regulatory network analysis of developing human erythroid progenitors reveals patterns of coregulation and potential transcriptional regulators

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.200803174

CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.200803174

Transcription factories are nuclear subcompartments that remain in the absence of transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.200803174

Nuclear reorganisation and chromatin decondensation are conserved, but distinct, mechanisms linked to Hox gene activation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.200803174

Nuclear organization in differentiating oligodendrocytes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.200803174

Regional specialization in human nuclei: visualization of discrete sites of transcription by RNA polymerase III.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.200803174

Nucleolar clustering of dispersed tRNA genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.200803174

Manipulating the mouse genome to engineer precise functional syntenic replacements with human sequence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.200803174

Evidence that homologous X-chromosome pairing requires transcription and Ctcf protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.200803174

Active RNA polymerases are localized within discrete transcription "factories' in human nuclei

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2542471

Subchromosomal Positioning of the Epidermal Differentiation Complex (EDC) in Keratinocyte and Lymphoblast Interphase Nuclei

9 December 2018

1 reference

12 December 2020

The path that RNA takes from the nucleus to the cytoplasm: a trip with some surprises

1 reference

12 December 2020

Homologous association of oppositely imprinted chromosomal domains

1 reference

12 December 2020

Alteration of chromosome positioning during adipocyte differentiation

1 reference

12 December 2020

Local and cis effects of the H element on expression of odorant receptor genes in mouse

1 reference

12 December 2020

Identifiers

DOI

10.1083/JCB.200803174

1 reference

4 August 2017

1 reference

4 August 2017

1 reference