(Q34625961)

3 August 2017

title

Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans (English)

1 reference

3 August 2017

main subject

Caenorhabditis elegans

0 references

Anthony A Hyman

0 references

Mark Gerstein

1 reference

3 August 2017

Valerie Reinke

1 reference

3 August 2017

Michael Snyder

1 reference

3 August 2017

Wei Niu

1 reference

3 August 2017

Zhi John Lu

1 reference

3 August 2017

Mei Zhong

1 reference

3 August 2017

Mihail Sarov

1 reference

3 August 2017

John I Murray

1 reference

3 August 2017

Cathleen M Brdlik

1 reference

3 August 2017

Judith Janette

1 reference

3 August 2017

Chao Chen

1 reference

3 August 2017

Pedro Alves

1 reference

3 August 2017

Elicia Preston

1 reference

3 August 2017

Cindie Slightham

1 reference

3 August 2017

Lixia Jiang

1 reference

3 August 2017

Stuart K Kim

1 reference

3 August 2017

Robert H Waterston

1 reference

3 August 2017

publication date

22 December 2010

1 reference

3 August 2017

1 reference

3 August 2017

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3 August 2017

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3 August 2017

page(s)

245-254

1 reference

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

3 August 2017

cites work

1 reference

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Examination of transcriptional networks reveals an important role for TCFAP2C, SMARCA4, and EOMES in trophoblast stem cell maintenance

7 July 2018

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Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response

7 July 2018

1 reference

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7 July 2018

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Differential chromatin marking of introns and expressed exons by H3K36me3.

7 July 2018

1 reference

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Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

Automated analysis of embryonic gene expression with cellular resolution in C. elegans.

7 July 2018

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A Caenorhabditis elegans model for epithelial-neuronal transdifferentiation

7 July 2018

1 reference

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Transcriptional regulation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

Genetic suppressors of Caenorhabditis elegans pha-4/FoxA identify the predicted AAA helicase ruvb-1/RuvB.

7 July 2018

1 reference

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A conserved role for a GATA transcription factor in regulating epithelial innate immune responses

7 July 2018

1 reference

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Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression

7 July 2018

1 reference

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The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics

7 July 2018

1 reference

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The dance of the Hox genes: patterning the anteroposterior body axis of Caenorhabditis elegans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

The Hox gene lin-39 is required during C. elegans vulval induction to select the outcome of Ras signaling.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

The large subunit of basal transcription factor SNAPc is a Myb domain protein that interacts with Oct-1.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

The pha-4 gene is required to generate the pharyngeal primordium of Caenorhabditis elegans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

The genetics of Caenorhabditis elegans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

Activation of a C. elegans Antennapedia homologue in migrating cells controls their direction of migration

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

HOM-C genes, Wnt signaling and axial patterning in the C. elegans posterior ventral epidermis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

PHA-4/Foxa mediates diet-restriction-induced longevity of C. elegans

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

Identification of cis-regulatory elements from the C. elegans Hox gene lin-39 required for embryonic expression and for regulation by the transcription factors LIN-1, LIN-31 and LIN-39.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

The roles of two C. elegans HOX co-factor orthologs in cell migration and vulva development

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

Environmentally induced foregut remodeling by PHA-4/FoxA and DAF-12/NHR.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

Caenorhabditis elegans HOM-C genes regulate the response of vulval precursor cells to inductive signal

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

A fork head/HNF-3 homolog expressed in the pharynx and intestine of the Caenorhabditis elegans embryo.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

A homeotic gene cluster patterns the anteroposterior body axis of C. elegans

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032928

A gene involved in the development of the posterior body region of C. elegans

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21177963

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Control of cell fate in the tail region of C. elegans by the gene egl-5

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21177963

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.114587.110

1 reference

3 August 2017

1 reference

3 August 2017

1 reference