(Q34569737)

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Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites

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scholarly article

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Europe PubMed Central

PubMed publication ID

3 August 2017

Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites (English)

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

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protein evolution

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adaptive evolution

1 reference

based on heuristic

inferred from title

3

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

object named as

Rasmus Nielsen

4

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author name string

Wendy S W Wong

1

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Ziheng Yang

2

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Europe PubMed Central

PubMed publication ID

3 August 2017

language of work or name

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publication date

1 October 2004

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

168

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Europe PubMed Central

PubMed publication ID

3 August 2017

2

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

1041-1051

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Comparative study of adaptive molecular evolution in different human immunodeficiency virus groups and subtypes

1 reference

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7 July 2018

MHC studies in nonmodel vertebrates: what have we learned about natural selection in 15 years?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

Tracking adaptive evolutionary events in genomic sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

The rapid evolution of reproductive proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

The adaptive evolution database (TAED)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

Statistical methods for detecting molecular adaptation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

Codon-substitution models for heterogeneous selection pressure at amino acid sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

Reevaluation of amino acid variability of the human immunodeficiency virus type 1 gp120 envelope glycoprotein and prediction of new discontinuous epitopes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

Positive selection on the H3 hemagglutinin gene of human influenza virus A.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

Positive Darwinian selection after gene duplication in primate ribonuclease genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

PAML: a program package for phylogenetic analysis by maximum likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

Long term trends in the evolution of H(3) HA1 human influenza type A

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

A new method of inference of ancestral nucleotide and amino acid sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

A codon-based model of nucleotide substitution for protein-coding DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

Structure of the human class I histocompatibility antigen, HLA-A2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

7 July 2018

False-positive selection identified by ML-based methods: examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotropic virus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

27 October 2018

Accuracy and power of bayes prediction of amino acid sites under positive selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

27 October 2018

Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

27 October 2018

Reliabilities of parsimony-based and likelihood-based methods for detecting positive selection at single amino acid sites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

27 October 2018

Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1448811

27 October 2018

Simulation study of the reliability and robustness of the statistical methods for detecting positive selection at single amino acid sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/15514074

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The effect of positive selection on a sexual reproduction gene in Thalassiosira weissflogii (Bacillariophyta): results obtained from maximum-likelihood and parsimony-based methods

1 reference

https://pubmed.ncbi.nlm.nih.gov/15514074

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A method for detecting positive selection at single amino acid sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/15514074

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pervasive adaptive evolution in mammalian fertilization proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/15514074

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ADAPTSITE: detecting natural selection at single amino acid sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/15514074

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The foreign antigen binding site and T cell recognition regions of class I histocompatibility antigens

1 reference

https://pubmed.ncbi.nlm.nih.gov/15514074

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods

1 reference

https://pubmed.ncbi.nlm.nih.gov/15514074

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/15514074

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An improved Bonferroni procedure for multiple tests of significance

1 reference

19 June 2022

https://opencitations.net/index/coci/api/v1/citations/10.1093/BIOMET/73.3.751

Identifiers

10.1534/GENETICS.104.031153

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

ResearchGate publication ID

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