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In this article we provide a new HGT-oriented likelihood framework for many problems that involve phylogeny-based HGT detection and reconstruction.
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Jun 17, 2022 � We present NetRAX, a tool for maximum likelihood (ML) inference of phylogenetic networks in the absence of ILS.
Aug 2, 2022 � We present NetRAX, a tool for maximum likelihood (ML) inference of phylogenetic networks in the absence of ILS.
Oct 2, 2015 � Maximum pseudo-likelihood allows for inferring species phylogenies in the presence of hybridization and ILS, while scaling to much larger data�...
The gold standard in this discipline is the phylogenetic tree reconstruction based on the Maximum Likelihood method. In this study, we present neural networks�...
Results: In this article we provide a new HGT-oriented likelihood framework for many problems that involve phylogeny-based HGT detection and reconstruction.
Nov 3, 2014 � Phylogenetic trees play a central role in biology, modeling evolutionary histories of taxa ranging from genes, to genomes, and to species.
2 Maximum Likelihood of Phylogenetic Networks. 2.1 Preliminaries and Definitions. Let T = (V,E) be a tree, where V and E are the tree nodes and tree edges�...
Maximum likelihood methods are used to estimate the phylogenetic trees for a set of species. The probabilities of DNA base substitutions are modeled by�...
Maximum likelihood, parsimony, Bayesian, and minimum evolution are typical optimality criteria used to assess how well a phylogenetic tree topology describes�...