Abstract. Biomedical entity normalization, which links entity mentions in biomedical texts to their corresponding standard concepts in a knowl-.

... /paper334⫸Vol-2980/paper323. Lu Fang Zhongguang Zheng Yiling Cao. Biomedical Entity Normalization based on Pre-trained Model with Enhanced Information.

May 30, 2020 � In this study, we proposed an entity normalization architecture by fine-tuning the pre-trained BERT / BioBERT / ClinicalBERT models and conducted extensive�...

Biomedical named entity normalization (BNEN) is a fundamental natural language processing (NLP) task in the biomedical domain.

Jan 30, 2020 � We present a novel knowledge-enhanced system for protein/gene named entity recognition (PNER) and normalization (PNEN).

In this study, we proposed an entity normalization architecture by fine-tuning the pre-trained BERT / BioBERT / ClinicalBERT models and conducted extensive�...

This work proposes a biomedical named entity normalization model that is based on a convolution neural network (CNN) for re-ranking, and achieves�...

Nov 3, 2022 � In this paper, we propose a novel fully-shared multi-task learning model based on the pre-trained language model in biomedical domain, namely BioBERT.

Jul 26, 2024 � Extraction and normalization of information captured in medical free-text documents are prerequisites for their use in research, clinical�...

We propose a general framework for incorporating various types of domain knowledge from multiple sources into biomedical PLMs.