Research project undertaken in Computational Genomics at the University of Pittsburgh. with Dr. Miler Lee and students to understand Maternal-to-Zygotic transition in Xenopus laevis

An early prototype of the GWAS Diversity Monitor, written in Bokeh

Visualization tools for genomics analysis based on ggplot2

Analyzes the GC skew of bacterial chromosomes using multiple calculations. Outputs a data frame of GC skew values and wiggle files for visualization.

genomic dashboards for visualizing SARS-CoV-2 genomic analyses

Telomerase Tracker

grur: an R package tailored for RADseq data imputations

R script employed in the manuscript 'Genomic signatures of clonality in the deep water kelp Laminaria rodriguezii' to compute the frequency of pairwise genetic distances among individuals.

Generate heatmap plots from genomic BigWig data

Active surveillance of newly-admitted nursing home patients for colonization of antibiotic-resistant bacteria reveals that multiple lineages have spread across southeast Michigan healthcare networks.

Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.

Data Analysis for Genomics, De Bruijn Graph for Genome Assembly.

Frontend web application for wally to visualize aligned sequencing reads

Analysis of SNP variants, derived from chip array genotyping and HTS sequencing

Desktop app for epiviz

This script is used to convert the output of ABRICATE tabulated output into a matrix samples with the genes as columns and the presence/absence of the gene as the values.

This miniproject is part of 'Fundamentals of Python Programming' virtual internship conducted by Nyberman Bioinformatics, Europe.

Online version of tool is live

R script employed in the manuscript 'Genomic signatures of clonality in the deep water kelp Laminaria rodriguezii' to compute the distribution of FIS across loci into discrete classes