C# web tool for reading GFF3 files, filtering, ordering, extracting information into Excel, GFF3 files, CDS files, and comparing GFF3 data with FASTA and CDS files.

Viral genome assemble and characterisation

Generate heatmap plots from genomic BigWig data

R code in R Markdown used for ucm genomes and genome analysis course

Multiple sequence alignment tool that builds on the concept of seed-and-extend algorithms

bash based metagenomics otu plotter before analysis

awk utilites for anlyzing pacbiohifi genomes and reads

fungal genome ITS coverage estimations.

a multipage golang application for seagrass health

rust pangenome for pangenome alignments

A useful python package for working on genomic coordinates.

A library of functions with the goal of mapping nucleotide-containing FASTA files for protein encoding ORFs as well as a computational analytics research paper on said functions

This code compares the theoretical and practical length distributions of fragments.

a microRNA deep learning go package

golang nuc-iteration

MAGset is a tool to analyze and compare MAGs of known species

maf alignments from protein to genome alignments using awk

a streamlit application for graphical analyisis of pacbiohifi reads

miniprot protein alignment analyzer

python implementation of sqlite3 for genome assembly