Identifying PMDs using a non-parametric HMM

Calculate DNA methylation age using Horvath 2013 method

Test data for the mint methylation pipeline

A pipeline for the integration of DNA methylation and hydroxymethylation data

Sample Analysis for diffloop paper

Galaxy pipeline for the Mint

Minimal methylation classifier (MIMIC): A novel method for derivation and rapid diagnostic detection of disease-associated DNA methylation signatures - We describe the development and validation of minimal methylation classifier (MIMIC), combining CpG signature design from genome-wide datasets, multiplex-PCR and detection by single-base extensio…

Tools to analyse allele-specific methylation using bisulfite sequencing data

Matlab codes (red channel & green channel) for analyzing coffee ring porosity and detecting cancer

bisulfite sequencing pattern analysis tool

💬 Talk: "methyvim: Data-Adaptive Estimation and Inference for Targeted Differential Methylation Analysis"

Guide for the Baccarelli Lab GitHub

These code are research work in CNDD lab.

Lecture given in University of Pittsburgh course Genomics (BIOSC 1250) related to the epigenetic-basis for PTSD, how methylation of cytosines is detected and how epigenetic modifications of PTSD are hereditary.

Analysis scripts for identification and visualization of Wilson disease-associated DNA methylation changes in human liver and blood

Analysis of DNA methylation and gene expression for thioredoxin system genes in Wilson disease

R Markdown files for analyses of rice small RNA, gene expression and DNA methylation

DNA methylation analysis notes from Ming Tang

A Bioconductor ExperimentHub data package for flow sorted purified whole blood cell types measured using DNA methylation on WGBS platform from BLUEPRINT