Skip to main content
Log in

Four-component spectral representation of DNA sequences

  • Original Paper
  • Published:
Journal of Mathematical Chemistry Aims and scope Submit manuscript

Abstract

A 2D-graphical representation of DNA sequences is presented. In this representation, the DNA sequence is represented by a four-component (A, C, T, G) spectrum taken as a superposition of Gaussian functions. The maxima of single Gaussians are determined by the positions of the bases in the sequence. Distribution moments of the four-component functions are proposed as descriptors of DNA sequences.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Nandy A., Harle M., Basak S.C.: ARKIVOC ix, 211 (2006)

    Google Scholar 

  2. Randić M., Vracko M., Nandy A., Basak S.C.: J. Chem. Inf. Comput. Sci. 40, 1235 (2000)

    Google Scholar 

  3. Gates M.A.J.: Theor. Biol. 119, 319 (1986)

    Article  CAS  Google Scholar 

  4. Nandy A.: Curr. Sci. 66, 309 (1994)

    CAS  Google Scholar 

  5. Leong P.M., Morgenthaler S.: Comput. Appl. Biosci. 11, 503 (1995)

    CAS  Google Scholar 

  6. Bielińska-Wa̧ż D., Clark T., Wa̧ż P., Nowak W., Nandy A.: Chem. Phys. Lett. 442, 140 (2007)

    Article  Google Scholar 

  7. Hamori E., Ruskin J.: J. Biol. Chem. 258, 1318 (1983)

    CAS  Google Scholar 

  8. Chi R., Ding K.: Chem. Phys. Lett. 407, 63 (2005)

    Article  CAS  Google Scholar 

  9. Liao B., Wang T.: J. Chem. Inf. Comput. Sci. 44, 1666 (2004)

    CAS  Google Scholar 

  10. Nandy A., Basak S.C.: J. Chem. Inf. Comput. Sci. 40, 915 (2000)

    CAS  Google Scholar 

  11. Randić M., Vracko M., Lers N., Plavsić D.: Chem. Phys. Lett. 368, 1 (2003)

    Article  Google Scholar 

  12. Aguero-Chapin G., González-Díaz H., Molina R., Varona-Santos J., Uriarte E., González-Díaz Y.: FEBS Lett. 580, 723 (2006)

    Article  Google Scholar 

  13. Bielińska-Wa̧ż D., Nowak W., Wa̧ż P., Nandy A., Clark T.: Chem. Phys. Lett. 443, 408 (2007)

    Article  Google Scholar 

  14. Bielińska-Wa̧ż D., Wa̧ż P., Clark T.: Chem. Phys. Lett. 445, 68 (2007)

    Article  Google Scholar 

  15. Bielińska-Wa̧ż D., Wa̧ż P., Basak S.C.: Eur. Phys. J. B 50, 333 (2006)

    Article  Google Scholar 

  16. Raychaudhury C., Nandy A.: J. Chem. Inf. Comput. Sci. 39, 243 (1999)

    CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Dorota Bielińska-Wa̧ż.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Bielińska-Wa̧ż, D. Four-component spectral representation of DNA sequences. J Math Chem 47, 41–51 (2010). https://doi.org/10.1007/s10910-009-9535-3

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10910-009-9535-3

Keywords

Navigation