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ORCIDJournal of Integrative Bioinformatics, Volume 21
Volume 21, Number 1, 2024
- Paul F. Lang
, Anand Jain, Christopher Rackauckas:
SBMLToolkit.jl: a Julia package for importing SBML into the SciML ecosystem. - Lucian P. Smith, Frank T. Bergmann, Alan Garny, Tomás Helikar, Jonathan R. Karr, David P. Nickerson, Herbert M. Sauro, Dagmar Waltemath, Matthias König:
The simulation experiment description markup language (SED-ML): language specification for level 1 version 5. - Sahar Aghakhani, Anna Niarakis, Sylvain Soliman:
MetaLo: metabolic analysis of Logical models extracted from molecular interaction maps. - Martin Golebiewski, Gary D. Bader, Padraig Gleeson, Thomas E. Gorochowski, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber:
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024. - Frontmatter. i-ii
- Bartholomew E. Jardine, Lucian P. Smith, Herbert M. Sauro:
MakeSBML: a tool for converting between Antimony and SBML. - Avery Mecham, Ashlie Stephenson, Badi I. Quinteros, Grace S. Brown, Stephen R. Piccolo:
TidyGEO: preparing analysis-ready datasets from Gene Expression Omnibus.
Volume 21, Number 2, 2024
- Daniel Martins, Maryam Abbasi, Conceição Egas, Joel P. Arrais:
Detecting outliers in case-control cohorts for improving deep learning networks on Schizophrenia prediction. - Hugo López-Fernández, Miguel Pinto, Cristina P. Vieira, Pedro Duque, Miguel Reboiro-Jato, Jorge Vieira:
Auto-phylo v2 and auto-phylo-pipeliner: building advanced, flexible, and reusable pipelines for phylogenetic inferences, estimation of variability levels and identification of positively selected amino acid sites. - Paloma Tejera-Nevado, Emilio Serrano, Ana González-Herrero, Rodrigo Bermejo-Moreno, Alejandro Rodríguez González:
Unlocking the power of AI models: exploring protein folding prediction through comparative analysis. - Frontmatter. i-ii
- Daniel Glez-Peña, Hugo López-Fernández, Pedro Duque, Cristina P. Vieira, Jorge Vieira:
Inferences on the evolution of the ascorbic acid synthesis pathway in insects using Phylogenetic Tree Collapser (PTC), a tool for the automated collapsing of phylogenetic trees using taxonomic information. - Vicente Enrique Machaca Arceda, Valeria Goyzueta, Maria Cruz, Erika Sejje, Luz Marina Pilco, Julio López, Yván Túpac:
Transformers meets neoantigen detection: a systematic literature review.
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