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Showing results 1 to 25 of 25150
| ID | Accession | Assay name | Assay title | Biosample classification | Target | Target of assay | Target gene symbol | Biosample summary | Biosample term name | Dbxrefs | Description | Lab | Project | Status | Files | Related series | Biosample accession | Biological replicate | Technical replicate | Linked antibody | Organism | Life stage | Biosample age | Biosample treatment | Biosample treatment ontology ID | Biosample treatment amount | Biosample treatment amount units | Biosample treatment duration | Biosample treatment duration units | Synchronization | Post-synchronization time | Post-synchronization time units | Biosample modification site target organism | Biosample modification site introduced gene organism | Replicates | Mixed biosamples | Cellular component | Library construction platform | Library construction method |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENCSR220XSM | ENCSR220XSM | PRO-cap | PRO-cap | cell line | Homo sapiens K562 | K562 | A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in K562 cells. | Haiyuan Yu, Cornell | ENCODE | released | ENCFF583FVG, ENCFF155YEA, ENCFF298PQK, ENCFF084GIA, ENCFF191TQL, ENCFF131OEV, ENCFF633JKZ, ENCFF082TEE, ENCFF850NZE, ENCFF364CCA, ENCFF918QKQ, ENCFF861JFD, ENCFF051LUE, ENCFF963WTD | ENCBS165TOO | 1 | 1, 2 | Homo sapiens | adult | 53 years | /replicates/9938ce82-a8ca-4175-869c-a23bc9174ed2/, /replicates/3f19928c-14fd-4cfc-9f9e-4cec84014941/ | capped RNA enrichment | ||||||||||||||||||||
| ENCSR558BNW | ENCSR558BNW | HiC | intact Hi-C | primary cell | Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years) | CD8-positive, alpha-beta T cell | CD8 resting intact Dnase HiC LP10 | Erez Aiden, Baylor | ENCODE | released | ENCFF657QRS, ENCFF646TXN, ENCFF063KHP, ENCFF694QLT, ENCFF398ZDC, ENCFF336ZKS, ENCFF873XRE, ENCFF532RZR, ENCFF439WDT | ENCBS710VUX | 1 | 1, 2 | Homo sapiens | adult | 21 years | /replicates/2fa169e7-50f6-4f68-9e20-54beed78444b/, /replicates/b513ffd9-3bfe-45bf-bed1-e4f8ffd24cb7/ | |||||||||||||||||||||
| ENCSR836MWK | ENCSR836MWK | HiC | intact Hi-C | primary cell | Homo sapiens activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours | activated CD4-positive, alpha-beta T cell | CD4 acticated intact Dnase HiC LP6 | Erez Aiden, Baylor | ENCODE | released | ENCFF118NWW, ENCFF150RDU, ENCFF386BXY, ENCFF372HJS, ENCFF247JCX, ENCFF407JPA, ENCFF946UFJ, ENCFF169BLJ, ENCFF384SGC | ENCBS856QVV | 1 | 1, 2 | Homo sapiens | adult | 20 years | anti-CD3 and anti-CD28 coated beads | 36 | hour | /replicates/b04e8c6f-23c5-4522-869d-01693212dda7/, /replicates/a42eb993-e372-4e75-868a-a4685a0a3c37/ | ||||||||||||||||||
| ENCSR902BCW | ENCSR902BCW | HiC | intact Hi-C | primary cell | Homo sapiens activated T-helper 1 cell male adult (35 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 30 ng/mL Interleukin-12 subunit beta for 36 hours, 10 ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 14 days, 1 μg/mL Interleukin-4 antibody for 36 hours, 30 ng/mL Interleukin-12 subunit alpha for 36 hours | activated T-helper 1 cell | Naive CD4 Th1 activated LP18 intact Mnase HiC | Erez Aiden, Baylor | ENCODE | released | ENCFF823JPS, ENCFF768BMK, ENCFF070GSZ, ENCFF624ZZI, ENCFF903PDA, ENCFF391OJM, ENCFF941RPC, ENCFF610AYI, ENCFF546HXQ | ENCBS951MKM | 1 | 1, 2 | Homo sapiens | adult | 35 years | anti-CD3 and anti-CD28 coated beads, Interleukin-12 subunit beta, Interleukin-2, Interleukin-4 antibody, Interleukin-12 subunit alpha | UniProtKB:P29460, UniProtKB:P60568, UniProtKB:P29459 | 30, 10, 1 | ng/mL, μg/mL | 24, 36, 14 | hour, day | /replicates/e773137e-fd3c-4fba-a86b-70a9c0a78b32/, /replicates/189afdb9-9dd2-408a-91f5-af7fea3a31ba/ | |||||||||||||||
| ENCSR949ZZD | ENCSR949ZZD | HiC | intact Hi-C | primary cell | Homo sapiens T-helper 1 cell male adult (35 years) treated with 30 ng/mL Interleukin-12 subunit beta for 36 hours, 30 ng/mL Interleukin-12 subunit alpha for 36 hours, 1 μg/mL Interleukin-4 antibody for 36 hours | T-helper 1 cell | Naive CD4 Th1 Resting LP18 intact Mnase HiC | Erez Aiden, Baylor | ENCODE | released | ENCFF820SDQ, ENCFF989WHN, ENCFF717SQH, ENCFF723KMI, ENCFF118XNF, ENCFF056HNB, ENCFF654GEN, ENCFF680JQH, ENCFF168ZTH | ENCBS853JPU | 1 | 1, 2 | Homo sapiens | adult | 35 years | Interleukin-12 subunit beta, Interleukin-12 subunit alpha, Interleukin-4 antibody | UniProtKB:P29460, UniProtKB:P29459 | 30, 1 | ng/mL, μg/mL | 36 | hour | /replicates/5740425b-192c-4836-8560-5553baca4af8/, /replicates/0bbac4e4-7638-4b5a-b0f0-f891fb57e493/ | |||||||||||||||
| ENCSR309KYA | ENCSR309KYA | ChIA-PET | ChIA-PET | cell line | /targets/RAD21-human/ | RAD21 | RAD21 | Homo sapiens HCT116 | HCT116 | Charles Lee | ENCODE | released | ENCFF908FUE, ENCFF529LTV, ENCFF518EIJ, ENCFF301QMJ, ENCFF769MZQ, ENCFF025POZ, ENCFF091BNH, ENCFF445IRW, ENCFF934SCM, ENCFF922YDM, ENCFF192IHH | ENCBS303KGS | 2 | 1 | ENCAB979JMO | Homo sapiens | adult | 48 years | /replicates/4a9fc9a0-3ac5-420a-80a0-fc48c94b6ced/ | ||||||||||||||||||
| ENCSR028AOM | ENCSR028AOM | ChIA-PET | ChIA-PET | cell line | /targets/RAD21-human/ | RAD21 | RAD21 | Homo sapiens HCT116 | HCT116 | Charles Lee | ENCODE | released | ENCFF626YXT, ENCFF952WNJ, ENCFF923BLG, ENCFF184HZN, ENCFF625LBL, ENCFF974WVJ, ENCFF803SZB, ENCFF270AAA, ENCFF209UVB, ENCFF281IIG, ENCFF849NNV | ENCBS828MWC | 2 | 1 | ENCAB979JMO | Homo sapiens | adult | 48 years | /replicates/f3c207e3-6517-4aaf-97ef-6bb44490976b/ | ||||||||||||||||||
| ENCSR355CTR | ENCSR355CTR | ChIA-PET | ChIA-PET | cell line | /targets/RAD21-human/ | RAD21 | RAD21 | Homo sapiens GM12878 | GM12878 | Charles Lee | ENCODE | released | ENCFF950WWG, ENCFF802MYF, ENCFF416RNE, ENCFF253ULY, ENCFF043ORZ, ENCFF385LYS, ENCFF324MAM, ENCFF827AXP, ENCFF915EOK, ENCFF809JCD, ENCFF220INK | ENCBS021YGS | 2 | 1 | ENCAB529YRC | Homo sapiens | adult | /replicates/00d409be-57dc-49cd-b56f-690b5fe64a0b/ | |||||||||||||||||||
| ENCSR764VXA | ENCSR764VXA | ChIA-PET | ChIA-PET | cell line | /targets/SMC1A-human/ | SMC1A | SMC1A | Homo sapiens GM12878 | GM12878 | Charles Lee | ENCODE | released | ENCFF112ESB, ENCFF445RAI, ENCFF721IWN, ENCFF892BLX, ENCFF275ZHL, ENCFF357CVD, ENCFF745BDW, ENCFF928HSD, ENCFF228ODA, ENCFF124UJI, ENCFF461YYO | ENCBS781HHE | 2 | 1 | ENCAB764HRI | Homo sapiens | adult | /replicates/fc94c709-1d7c-4be1-9d57-8b1a25c4e5ee/ | |||||||||||||||||||
| ENCSR515SNH | ENCSR515SNH | single-nucleus ATAC-seq | snATAC-seq | tissue | Homo sapiens heart tissue nuclear fraction female embryo (84 days) | heart | Michael Snyder, Stanford | ENCODE | released | ENCFF871WLY, ENCFF468VAM, ENCFF692YAN, ENCFF352YRT, ENCFF018QRL, ENCFF003FBC, ENCFF592HCL, ENCFF054RZG, ENCFF454GYN, ENCFF021CSA, ENCFF401MVS | ENCBS835WTE | 1 | 1 | Homo sapiens | embryonic | 84 days | /replicates/bc34a208-9dd8-40a1-b9ec-1a13cffff283/ | nucleus | 10X Genomics Chromium Controller | ||||||||||||||||||||
| ENCSR715JSZ | ENCSR715JSZ | single-nucleus ATAC-seq | snATAC-seq | tissue | Homo sapiens heart tissue nuclear fraction male embryo (94 days) | heart | Michael Snyder, Stanford | ENCODE | released | ENCFF900YGG, ENCFF341YZK, ENCFF688YDP, ENCFF837WLV, ENCFF511BDZ, ENCFF036VOK, ENCFF933RYY, ENCFF991WRG, ENCFF778FUB, ENCFF542LPL, ENCFF946HNM | ENCBS104EDP | 1 | 1 | Homo sapiens | embryonic | 94 days | /replicates/17c4395c-5f33-4b87-8eac-4fa0c9908a0b/ | nucleus | 10X Genomics Chromium Controller | ||||||||||||||||||||
| ENCSR282FAK | ENCSR282FAK | single-nucleus ATAC-seq | snATAC-seq | tissue | Homo sapiens heart tissue nuclear fraction female embryo (120 days) | heart | Michael Snyder, Stanford | ENCODE | released | ENCFF779JYT, ENCFF296JKN, ENCFF184QTJ, ENCFF912IPD, ENCFF759QUX, ENCFF392OUK, ENCFF265HLA, ENCFF904ARJ | ENCBS788CMM | 1 | 1 | Homo sapiens | embryonic | 120 days | /replicates/12d142dc-35ee-4dac-bd50-9ba347481b13/ | nucleus | 10X Genomics Chromium Controller | ||||||||||||||||||||
| ENCSR890TGR | ENCSR890TGR | single-nucleus ATAC-seq | snATAC-seq | tissue | Homo sapiens heart tissue nuclear fraction female embryo (73 days) | heart | Michael Snyder, Stanford | ENCODE | released | ENCFF143FFW, ENCFF933ZBT, ENCFF787YHK, ENCFF436LDC, ENCFF413GWT, ENCFF082UJB, ENCFF609RJY, ENCFF658TEH | ENCBS539UEJ | 1 | 1 | Homo sapiens | embryonic | 73 days | /replicates/e192ad7d-5003-4837-af9f-a99975da7f9e/ | nucleus | 10X Genomics Chromium Controller | ||||||||||||||||||||
| ENCSR024TGD | ENCSR024TGD | single-nucleus ATAC-seq | snATAC-seq | tissue | Homo sapiens heart tissue nuclear fraction male embryo (103 days) | heart | Michael Snyder, Stanford | ENCODE | released | ENCFF588ERE, ENCFF473FGD, ENCFF024CBL, ENCFF167HPF, ENCFF543XRW, ENCFF864BVM, ENCFF292ZWV, ENCFF533VBC, ENCFF381GDR, ENCFF799OFD, ENCFF908JHS | ENCBS452UFQ | 1 | 1 | Homo sapiens | embryonic | 103 days | /replicates/c3a7a1f3-45f7-4b6d-8c3f-5041ab41d4bd/ | nucleus | 10X Genomics Chromium Controller | ||||||||||||||||||||
| ENCSR004IAY | ENCSR004IAY | single-nucleus ATAC-seq | snATAC-seq | tissue | Homo sapiens heart tissue nuclear fraction female embryo (105 days) | heart | Michael Snyder, Stanford | ENCODE | released | ENCFF949SIR, ENCFF021GSU, ENCFF180BCO, ENCFF805BFM, ENCFF425IFQ, ENCFF716ALM, ENCFF851VTB, ENCFF664LNP, ENCFF337CQR, ENCFF557LJE, ENCFF949JTQ | ENCBS534KHU | 1 | 1 | Homo sapiens | embryonic | 105 days | /replicates/6161abf1-5351-4fcb-8cdd-178a5c388ee5/ | nucleus | 10X Genomics Chromium Controller | ||||||||||||||||||||
| ENCSR376IBI | ENCSR376IBI | single-nucleus ATAC-seq | snATAC-seq | tissue | Homo sapiens heart tissue nuclear fraction female embryo (115 days) | heart | Michael Snyder, Stanford | ENCODE | released | ENCFF289FLJ, ENCFF207IJF, ENCFF224DHC, ENCFF450YRB, ENCFF682AFX, ENCFF582BNN, ENCFF070HKH, ENCFF046FSI, ENCFF412CDO, ENCFF611TIE, ENCFF958UTA | ENCBS282BRL | 1 | 1 | Homo sapiens | embryonic | 115 days | /replicates/3891e6c5-63a3-489b-8f09-5a52c8ae0e87/ | nucleus | 10X Genomics Chromium Controller | ||||||||||||||||||||
| ENCSR306FRQ | ENCSR306FRQ | single-nucleus ATAC-seq | snATAC-seq | tissue | Homo sapiens heart tissue nuclear fraction male embryo (59 days) | heart | Michael Snyder, Stanford | ENCODE | released | ENCFF600ABV, ENCFF609HQK, ENCFF676PAK, ENCFF786ZBJ, ENCFF666UFQ, ENCFF611LUY, ENCFF832IKM, ENCFF118QMN, ENCFF939OGR, ENCFF214EVC, ENCFF575DGZ | ENCBS092RCN | 1 | 1 | Homo sapiens | embryonic | 59 days | /replicates/181da0c5-4e50-4dbc-b8d7-e8addad555a3/ | nucleus | 10X Genomics Chromium Controller | ||||||||||||||||||||
| ENCSR805DID | ENCSR805DID | single-nucleus ATAC-seq | snATAC-seq | tissue | Homo sapiens heart tissue nuclear fraction female embryo (127 days) | heart | Michael Snyder, Stanford | ENCODE | released | ENCFF563ADL, ENCFF456MTV, ENCFF982QAC, ENCFF151EBT, ENCFF194WSA, ENCFF936QVP, ENCFF539YLL, ENCFF202XSZ, ENCFF560SNL, ENCFF353WWC, ENCFF109FJX | ENCBS869CTV | 1 | 1 | Homo sapiens | embryonic | 127 days | /replicates/54663217-0bb4-4503-8c93-95f2c9dc1d18/ | nucleus | 10X Genomics Chromium Controller | ||||||||||||||||||||
| ENCSR627MEA | ENCSR627MEA | single-cell RNA sequencing assay | snRNA-seq | tissue | Homo sapiens heart tissue nuclear fraction female embryo (84 days) | heart | Michael Snyder, Stanford | ENCODE | released | ENCFF497YAY, ENCFF757DMR, ENCFF277RQO, ENCFF814HAZ, ENCFF565WSB, ENCFF523WSI, ENCFF887HJU, ENCFF776DQR, ENCFF103HTJ, ENCFF142MTT | ENCBS835WTE | 1 | 1 | Homo sapiens | embryonic | 84 days | /replicates/321e22c5-14c9-40dd-8077-bdff55d7d3c8/ | nucleus | 10X Genomics Chromium Controller | ||||||||||||||||||||
| ENCSR497FRI | ENCSR497FRI | single-cell RNA sequencing assay | snRNA-seq | tissue | Homo sapiens heart tissue nuclear fraction male embryo (94 days) | heart | Michael Snyder, Stanford | ENCODE | released | ENCFF531MTV, ENCFF158UKY, ENCFF672ONG, ENCFF951LHO, ENCFF925ASB, ENCFF923KZY, ENCFF243UTL, ENCFF802AQC, ENCFF836FYS, ENCFF495MUC | ENCBS104EDP | 1 | 1 | Homo sapiens | embryonic | 94 days | /replicates/ae42f7cf-c306-4265-a686-78d0303a7ce0/ | nucleus | 10X Genomics Chromium Controller | ||||||||||||||||||||
| ENCSR607AZP | ENCSR607AZP | single-cell RNA sequencing assay | snRNA-seq | tissue | Homo sapiens heart tissue nuclear fraction female embryo (120 days) | heart | Michael Snyder, Stanford | ENCODE | released | ENCFF144ZNW, ENCFF866XQC, ENCFF549BYR, ENCFF913MCP, ENCFF277YKC, ENCFF067VBC, ENCFF878AEW, ENCFF727JRO, ENCFF332KEW, ENCFF283KIZ | ENCBS788CMM | 1 | 1 | Homo sapiens | embryonic | 120 days | /replicates/0aef3576-c384-4d64-9443-e31801bc0520/ | nucleus | 10X Genomics Chromium Controller | ||||||||||||||||||||
| ENCSR268GBA | ENCSR268GBA | single-cell RNA sequencing assay | snRNA-seq | tissue | Homo sapiens heart tissue nuclear fraction female embryo (73 days) | heart | Michael Snyder, Stanford | ENCODE | released | ENCFF650DMQ, ENCFF826DSJ, ENCFF023JMQ, ENCFF304SUL, ENCFF204EMS, ENCFF020ZLH, ENCFF654KZX, ENCFF684YRB, ENCFF714HSX, ENCFF368HVK | ENCBS539UEJ | 1 | 1 | Homo sapiens | embryonic | 73 days | /replicates/961f4e59-7c33-497a-939b-557a14bcd4a1/ | nucleus | 10X Genomics Chromium Controller | ||||||||||||||||||||
| ENCSR170SFR | ENCSR170SFR | single-cell RNA sequencing assay | snRNA-seq | tissue | Homo sapiens heart tissue nuclear fraction male embryo (103 days) | heart | Michael Snyder, Stanford | ENCODE | released | ENCFF153QCI, ENCFF161GUP, ENCFF808LKA, ENCFF434PEN, ENCFF634JRS, ENCFF766GEG, ENCFF260ZOM, ENCFF248EWR, ENCFF567QZW, ENCFF739TMK | ENCBS452UFQ | 1 | 1 | Homo sapiens | embryonic | 103 days | /replicates/725f3d22-6935-4e7f-9e1f-71f6562b0e40/ | nucleus | 10X Genomics Chromium Controller | ||||||||||||||||||||
| ENCSR571FEW | ENCSR571FEW | single-cell RNA sequencing assay | snRNA-seq | tissue | Homo sapiens heart tissue nuclear fraction female embryo (105 days) | heart | Michael Snyder, Stanford | ENCODE | released | ENCFF410QVG, ENCFF569GXX, ENCFF194FWT, ENCFF550PFS, ENCFF537IRU, ENCFF781UIT, ENCFF807XXG, ENCFF775ANN, ENCFF845AYB, ENCFF733IOE | ENCBS534KHU | 1 | 1 | Homo sapiens | embryonic | 105 days | /replicates/8d842b5e-090a-4bd3-be78-b72cc1362d7d/ | nucleus | 10X Genomics Chromium Controller | ||||||||||||||||||||
| ENCSR252RYC | ENCSR252RYC | single-cell RNA sequencing assay | snRNA-seq | tissue | Homo sapiens heart tissue nuclear fraction female embryo (115 days) | heart | Michael Snyder, Stanford | ENCODE | released | ENCFF211SQA, ENCFF345MDS, ENCFF257LRL, ENCFF822WZR, ENCFF024BUJ, ENCFF426WHV, ENCFF388YNA, ENCFF849ALE, ENCFF999CQQ, ENCFF561SCY | ENCBS282BRL | 1 | 1 | Homo sapiens | embryonic | 115 days | /replicates/907a6035-99b4-49de-af36-d6b14daaef22/ | nucleus | 10X Genomics Chromium Controller |